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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1689
ChIP-seq
1398
total RNA-seq
409
ATAC-seq
250
single cell RNA-seq
203
DNase-seq
84
RNA microarray
73
WGBS
56
pCHi-C
49
snATAC-seq
23
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
49
DNA accessibility
Date released
21
May, 2022
16
January, 2021
10
April, 2020
August, 2021
2
February, 2023
Available data
21
zippedFastqFolder
Organism
48
Homo sapiens
Biosample type
29
primary cell
20
tissue
Organ
10
lung
10
pancreas
8
blood
8
bodily fluid
Project
21
HPAP
18
T1D
10
LungMap
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
Audit category:
audit script error
organ_slims!
blood vessel
month_released!
August, 2021
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
49 results
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snATAC-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
islet of Langerhans
6
pancreas
4
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