Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1554
ChIP-seq
1069
total RNA-seq
333
ATAC-seq
283
single cell RNA-seq
195
DNase-seq
87
RNA microarray
73
snATAC-seq
55
pCHi-C
22
WGBS
20
Hi-C
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA accessibility
22
DNA methylation
Date released
27
February, 2021
22
May, 2022
10
April, 2020
10
July, 2019
9
August, 2017
8
January, 2021
6
August, 2021
3
November, 2018
Available data
34
fastq
21
zippedFastqFolder
12
bam
12
bed bedMethyl
12
bigBed bedMethyl
12
bigWig
1
bed bed3+
1
txt
Organism
94
Homo sapiens
Biosample type
56
primary cell
38
tissue
1
cell line
Organ
pancreas
47
epithelium
10
lung
8
blood
8
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
48
HPAP
29
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
12
GRCh38
1
hg19
Lab
48
Klaus Kaestner, Upenn
23
AMP-T2D consortium
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
organ_slims!
blood vessel
pancreas
BIOSAMPLE
ASSAY
95 results
search-icon
table-tab-icon
Clear Filters
snATAC-seq
WGBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
heart left ventricle
4
adipose tissue
3
liver
3
+ See 8 more…
cell line
HepG2
1
See all biosamples
Download