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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
1
ChIP-seq
1
pCHi-C
Assay category
27
DNA accessibility
18
Transcription
6
DNA methylation
1
DNA binding
Target of assay
1
control
Date released
253
August, 2021
161
May, 2022
139
February, 2021
135
August, 2017
125
February, 2023
125
November, 2017
87
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
31
March, 2020
30
June, 2019
29
October, 2018
22
February, 2020
19
April, 2020
17
December, 2017
17
November, 2018
16
January, 2021
15
April, 2019
15
July, 2019
14
May, 2023
12
May, 2019
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
89
txt
46
fastq
14
tsv
6
csv
1
bam
1
bedpe bed3+
1
tagAlign
Organism
140
Homo sapiens
Biosample type
93
tissue
45
primary cell
1
cell line
1
in vitro differentiated cells
Organ
84
bone element
8
kidney
6
epithelium
6
pancreas
2
artery
blood vessel
2
heart
2
vasculature
1
adipose tissue
1
connective tissue
1
liver
Project
95
AMP
45
HPAP
Genome assembly (visualization)
hg19
507
GRCh38
Lab
95
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
organ_slims!
blood vessel
assembly!
hg19
BIOSAMPLE
ASSAY
140 results
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RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
bone element
84
kidney
5
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
cell line
iPSC derived cell line
1
in vitro differentiated cells
white fat cell
1
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