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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
4
Hi-C
2
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
10
DNA binding
4
3D chromatin structure
3
DNA methylation
3
Transcription
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
2
narrow histone mark
Date released
9
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
3
tsv
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
21
Homo sapiens
Biosample type
19
tissue
2
primary cell
Organ
283
pancreas
225
kidney
211
epithelium
203
heart
122
liver
89
bone element
74
connective tissue
blood vessel
69
vasculature
58
adipose tissue
47
brain
46
artery
27
eye
26
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
hg19
53
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
assembly!
hg19
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
Hi-C
RRBS
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
7
2
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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