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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
7
WGBS
4
Hi-C
4
total RNA-seq
3
pCHi-C
2
RRBS
1
RNA microarray
1
single cell RNA-seq
Assay category
66
DNA binding
9
DNA methylation
5
Transcription
4
3D chromatin structure
Target of assay
36
histone
36
histone modification
30
control
24
broad histone mark
12
narrow histone mark
Date released
53
August, 2017
18
October, 2018
5
July, 2019
4
February, 2020
2
June, 2019
2
March, 2020
1
August, 2018
1
August, 2021
1
May, 2019
1
May, 2022
Available data
25
bam
23
fastq
9
tagAlign
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
bigWig
1
bedpe bed3+
Organism
87
Homo sapiens
Biosample type
85
tissue
2
primary cell
1
in vitro differentiated cells
Organ
288
pancreas
225
kidney
213
epithelium
205
heart
166
liver
122
brain
95
connective tissue
89
bone element
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
hg19
477
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
assembly!
hg19
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
WGBS
Hi-C
total RNA-seq
pCHi-C
RRBS
RNA microarray
single cell RNA-seq
tissue
subcutaneous abdominal adipose tissue
35
3
skeletal muscle tissue
9
2
1
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
3
1
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primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
in vitro differentiated cells
white fat cell
1
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