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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
74
ChIP-seq
1
ATAC-seq
Assay category
197
DNA accessibility
74
DNA binding
Target of assay
39
histone
39
histone modification
35
transcription factor
21
broad histone mark
18
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
53
November, 2017
19
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
November, 2020
Available data
2807
bam
2746
bigWig
1464
bed narrowPeak
1342
tsv
949
fastq
920
bigBed narrowPeak
271
bed broadPeak
256
bigBed broadPeak
249
bed bed3+
242
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
186
tissue
45
cell line
39
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
46
brain
36
limb
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
14
pancreas
blood vessel
9
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
271
AMP
Genome assembly (visualization)
286
hg19
271
GRCh38
Lab
270
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
271 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
12
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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