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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
19
DNase-seq
10
RRBS
5
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
252
Transcription
232
DNA binding
103
DNA accessibility
10
DNA methylation
5
3D chromatin structure
Target of assay
217
histone
217
histone modification
111
broad histone mark
106
narrow histone mark
9
RNA binding protein
9
control
9
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
39
June, 2019
27
July, 2019
10
October, 2019
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
Available data
573
bigWig
553
bam
272
bed narrowPeak
250
tsv
223
fastq
99
tagAlign
86
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
25
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
2
hdf5
1
bed bed3
Organism
603
Homo sapiens
Biosample type
1681
tissue
603
primary cell
466
cell line
297
in vitro differentiated cells
3
stem cell
Organ
226
epithelium
185
pancreas
34
connective tissue
30
vasculature
25
kidney
blood vessel
21
brain
16
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
420
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
603
hg19
518
GRCh38
Lab
385
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
42
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
blood vessel
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
603 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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