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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
57
ATAC-seq
56
ChIP-seq
2
Capture-C
2
Hi-C
Assay category
203
Transcription
57
DNA accessibility
56
DNA binding
2
3D chromatin structure
Target of assay
45
histone
45
histone modification
38
narrow histone mark
11
transcription factor
7
broad histone mark
1
RNA binding protein
Date released
510
February, 2021
316
May, 2021
278
November, 2017
276
August, 2017
260
May, 2020
183
June, 2019
180
October, 2019
164
July, 2018
82
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
58
May, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
31
February, 2018
30
December, 2018
29
March, 2020
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
306
bigWig
300
bam
203
tsv
68
bed narrowPeak
42
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
Organism
320
Homo sapiens
Biosample type
171
tissue
93
primary cell
33
in vitro differentiated cells
23
cell line
Organ
188
liver
8
embryo
4
connective tissue
3
epithelium
1
kidney
Project
275
AMP
45
T1D
Genome assembly (visualization)
320
hg19
312
GRCh38
Lab
255
AMP-T2D consortium
45
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
320 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
Hi-C
tissue
liver
143
27
kidney
1
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
+ See 21 more…
in vitro differentiated cells
neural progenitor cell
7
10
12
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
H1-hESC
8
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