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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
47
ATAC-seq
27
ChIP-seq
1
Hi-C
Assay category
188
Transcription
47
DNA accessibility
27
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
Date released
510
February, 2021
316
May, 2021
278
November, 2017
276
August, 2017
260
May, 2020
183
June, 2019
180
October, 2019
164
July, 2018
82
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
58
May, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
31
February, 2018
30
December, 2018
29
March, 2020
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
260
bam
260
bigWig
188
tsv
27
bed narrowPeak
27
tagAlign
1
bedpe
1
hic
Organism
263
Homo sapiens
Biosample type
173
tissue
90
primary cell
Organ
170
liver
3
pancreas
Project
218
AMP
45
T1D
Genome assembly (visualization)
263
hg19
209
GRCh38
Lab
215
AMP-T2D consortium
45
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
8
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
263 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
tissue
liver
143
27
islet of Langerhans
2
1
primary cell
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
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