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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
67
ChIP-seq
25
DNase-seq
15
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
74
Transcription
67
DNA binding
40
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
7
transcription factor
5
RNA binding protein
Date released
66
February, 2021
47
April, 2019
28
June, 2019
14
July, 2019
12
May, 2019
8
October, 2019
4
February, 2023
4
March, 2020
3
May, 2021
Available data
176
bam
169
bigWig
103
bed narrowPeak
86
bigBed narrowPeak
74
tsv
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
4
bed bed3
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
186
Homo sapiens
Biosample type
177
tissue
8
primary cell
1
in vitro differentiated cells
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
186
AMP
Genome assembly (visualization)
225
GRCh38
186
hg19
Lab
186
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
186 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
bone tissue
58
heart left ventricle
3
29
3
2
1
1
heart
4
12
16
1
1
heart right ventricle
1
11
1
1
right atrium auricular region
2
7
2
1
+ See 16 more…
primary cell
cardiac fibroblast
3
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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