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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
Assay category
12
DNA accessibility
Date released
10
February, 2023
2
February, 2021
Available data
3000
bam
2787
bigWig
1585
bed narrowPeak
1382
tsv
1344
fastq
939
bigBed narrowPeak
389
tagAlign
305
bed broadPeak
268
bigBed broadPeak
256
bed bed3+
153
zippedFastqFolder
76
txt
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
15
hic
14
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
12
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent replicate
organ_slims!
blood vessel
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
12 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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