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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
71
ChIP-seq
2
ATAC-seq
Assay category
197
DNA accessibility
71
DNA binding
Target of assay
46
transcription factor
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
68
November, 2017
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
2744
bam
2551
bigWig
1458
bed narrowPeak
1339
tsv
921
bigBed narrowPeak
899
fastq
268
bed broadPeak
257
bigBed broadPeak
229
bed bed3+
223
tagAlign
161
txt
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
268
Homo sapiens
Biosample type
182
tissue
59
cell line
27
primary cell
Organ
78
kidney
63
liver
47
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
blood vessel
9
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
268
AMP
Genome assembly (visualization)
252
GRCh38
245
hg19
Lab
266
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
organ_slims!
blood vessel
month_released!
August, 2017
BIOSAMPLE
ASSAY
268 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
58
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 14 more…
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