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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
26
DNase-seq
Assay category
75
DNA binding
26
DNA accessibility
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
22
June, 2019
15
August, 2017
1
November, 2020
1
October, 2019
Available data
1392
bam
1317
bigWig
978
fastq
804
bed narrowPeak
470
tsv
464
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
101
bed broadPeak
101
bigBed broadPeak
62
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
101
Homo sapiens
Biosample type
tissue
59
cell line
41
primary cell
1
in vitro differentiated cells
Organ
60
liver
22
epithelium
12
vasculature
11
brain
10
kidney
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
101
AMP
Genome assembly (visualization)
95
hg19
85
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
biosample_type!
tissue
BIOSAMPLE
ASSAY
101 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
glomerular visceral epithelial cell
2
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in vitro differentiated cells
adipocyte
1
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