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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
3
pCHi-C
Assay category
9
3D chromatin structure
Date released
4
March, 2020
3
October, 2022
2
October, 2019
1
August, 2018
1
August, 2021
1
November, 2019
Available data
1392
bam
1317
bigWig
978
fastq
804
bed narrowPeak
470
tsv
464
bigBed narrowPeak
154
tagAlign
153
zippedFastqFolder
101
bed broadPeak
101
bigBed broadPeak
62
bed bed3+
12
bedpe bed3+
11
bed bedMethyl
11
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
12
Homo sapiens
Biosample type
tissue
7
in vitro differentiated cells
3
primary cell
2
cell line
Organ
5
epithelium
4
pancreas
1
adipose tissue
blood vessel
1
connective tissue
1
liver
1
vasculature
1
vein
Project
9
AMP
3
HPAP
Genome assembly (visualization)
11
hg19
Lab
8
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
organ_slims!
blood vessel
biosample_type!
tissue
BIOSAMPLE
ASSAY
12 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
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