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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1018
total RNA-seq
791
ChIP-seq
215
ATAC-seq
174
single cell RNA-seq
139
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
16
small RNA-seq
11
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1208
Transcription
791
DNA binding
386
DNA accessibility
DNA methylation
11
3D chromatin structure
Target of assay
543
histone modification
542
histone
295
narrow histone mark
247
broad histone mark
159
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
270
August, 2017
223
August, 2021
193
May, 2020
173
October, 2019
128
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
60
February, 2023
58
May, 2019
50
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
23
October, 2017
20
February, 2020
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1718
bam
1618
bigWig
1056
tsv
813
bed narrowPeak
435
bigBed narrowPeak
364
fastq
238
tagAlign
174
bed broadPeak
166
bed bed3+
157
txt
137
bigBed broadPeak
64
xls
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2505
Homo sapiens
Biosample type
2514
tissue
999
primary cell
595
cell line
394
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
499
pancreas
482
adipose tissue
356
liver
304
heart
298
kidney
264
brain
158
bone element
blood vessel
131
vasculature
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2417
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1665
GRCh38
1601
hg19
Lab
2162
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
limb
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
2514 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
70
68
6
1
7
4
3
1
4
adipose tissue
382
2
3
1
liver
167
145
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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