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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
2
WGBS
2
total RNA-seq
1
ChIP-seq
Assay category
95
Transcription
4
DNA methylation
3
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
5
March, 2020
4
July, 2019
2
February, 2020
1
April, 2019
1
February, 2023
1
October, 2019
Available data
bam
120
bigWig
113
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
106
Homo sapiens
Biosample type
105
tissue
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
142
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
6
hg19
Lab
106
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
files.file_type!
bam
BIOSAMPLE
ASSAY
106 results
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single cell RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
total RNA-seq
ChIP-seq
tissue
heart left ventricle
18
1
1
1
2
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
aortic valve
4
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primary cell
cardiac fibroblast
1
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