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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
245
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
245
Transcription
Date released
76
February, 2023
55
May, 2021
47
May, 2020
26
September, 2018
16
September, 2020
11
July, 2019
5
December, 2019
4
November, 2020
2
October, 2018
2
October, 2019
1
February, 2021
Available data
150
bigWig
148
bam
148
tsv
120
fastq
2
bed bed3+
Organism
245
Homo sapiens
Biosample type
1030
tissue
245
primary cell
136
in vitro differentiated cells
61
cell line
Organ
93
epithelium
81
pancreas
10
connective tissue
6
kidney
5
liver
4
heart
2
artery
blood vessel
2
vasculature
1
adipose tissue
1
musculature of body
1
pericardium
Project
96
T1D
92
HPAP
57
AMP
Genome assembly (visualization)
150
hg19
148
GRCh38
Lab
98
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
55
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
blood vessel
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
245 results
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total RNA-seq
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
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