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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
12
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
1
ChIP-seq
Assay category
39
DNA accessibility
18
Transcription
6
DNA methylation
1
DNA binding
Target of assay
1
control
Date released
266
August, 2021
180
May, 2022
157
February, 2023
153
February, 2021
139
August, 2017
96
May, 2021
96
October, 2019
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
41
March, 2020
30
November, 2019
29
October, 2018
22
December, 2017
22
February, 2020
22
July, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
12
May, 2019
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
507
tsv
506
bam
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
bed bed3
2
bed bed3+
2
tagAlign
Organism
153
Homo sapiens
Biosample type
101
tissue
46
primary cell
4
in vitro differentiated cells
2
cell line
Organ
92
bone element
10
artery
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
5
connective tissue
2
liver
Project
108
AMP
45
HPAP
Genome assembly (visualization)
14
hg19
8
GRCh38
Lab
108
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
organ_slims!
blood vessel
files.file_type!
bed bed3
bigWig
BIOSAMPLE
ASSAY
153 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
ChIP-seq
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
in vitro differentiated cells
adipocyte
4
cell line
HepG2
1
iPSC derived cell line
1
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