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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
4
DNase-seq
3
single cell RNA-seq
2
Hi-C
1
RRBS
Assay category
6
DNA binding
4
DNA accessibility
3
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
5
control
2
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
6
July, 2019
6
November, 2017
4
June, 2019
Available data
15
bigWig
13
bam
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
bed bed3+
6
fastq
3
tsv
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
16
Homo sapiens
Biosample type
tissue
16
primary cell
Organ
509
epithelium
441
pancreas
429
liver
131
connective tissue
103
vasculature
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
16
AMP
Genome assembly (visualization)
16
hg19
11
GRCh38
Lab
16
AMP-T2D consortium
organ_slims!
blood vessel
files.file_type!
bed bed3
biosample_type!
tissue
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
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