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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
834
ChIP-seq
222
ATAC-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
16
small RNA-seq
15
Hi-C
10
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
2
RRBS
Assay category
1214
Transcription
834
DNA binding
256
DNA accessibility
15
3D chromatin structure
12
DNA methylation
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
223
August, 2021
214
October, 2019
193
May, 2020
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
May, 2019
60
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
11
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1820
bam
1702
bigWig
1062
tsv
884
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2440
Homo sapiens
Biosample type
2449
tissue
1006
primary cell
536
cell line
393
in vitro differentiated cells
10
stem cell
Organ
543
connective tissue
493
pancreas
484
adipose tissue
357
liver
279
heart
237
brain
230
kidney
158
bone element
blood vessel
127
vasculature
85
limb
69
artery
53
eye
47
musculature of body
41
nerve
22
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2352
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1568
GRCh38
1521
hg19
Lab
2097
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
files.file_type!
bed bedMethyl
bigBed broadPeak
BIOSAMPLE
ASSAY
2449 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
RRBS
tissue
islet of Langerhans
298
71
68
7
4
3
1
4
1
adipose tissue
382
2
3
1
1
liver
167
145
20
1
1
1
1
3
kidney
49
27
75
64
6
1
1
bone element
84
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