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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
31
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
16
May, 2019
14
July, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
273
Homo sapiens
Biosample type
262
tissue
10
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
284
brain
234
vasculature
blood vessel
208
kidney
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
273
AMP
Genome assembly (visualization)
153
GRCh38
114
hg19
Lab
233
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
organ_slims!
blood vessel
files.file_type!
bed bedMethyl
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
2
1
1
2
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
heart right ventricle
13
17
1
1
1
1
right cardiac atrium
6
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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