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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
4
ATAC-seq
Assay category
33
DNA binding
4
DNA accessibility
Target of assay
19
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
182
June, 2019
33
August, 2017
15
December, 2017
9
November, 2018
5
August, 2021
4
February, 2023
4
October, 2019
2
February, 2021
2
July, 2019
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
363
fastq
282
bam
275
bigWig
172
bed narrowPeak
105
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
37
bed bed3+
15
bigBed broadPeak
10
bed bed3
7
txt
6
bed bedMethyl
6
bigBed bedMethyl
3
bed bedgraph
Organism
37
Homo sapiens
Biosample type
26
tissue
11
in vitro differentiated cells
Organ
19
pancreas
15
connective tissue
4
adipose tissue
3
liver
Project
37
AMP
Genome assembly (visualization)
37
hg19
33
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
tissue
islet of Langerhans
19
white adipose tissue
4
liver
3
in vitro differentiated cells
adipocyte
7
1
immature adipocyte
2
preadipocyte
1
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