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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
7
ATAC-seq
Assay category
8
Transcription
7
DNA accessibility
Date released
10
February, 2021
3
February, 2023
1
November, 2018
1
September, 2018
Available data
3212
bam
2979
bigWig
1648
bed narrowPeak
1532
tsv
1355
fastq
963
bigBed narrowPeak
392
tagAlign
309
bed broadPeak
272
bigBed broadPeak
262
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
7
in vitro differentiated cells
6
tissue
2
primary cell
Organ
5
kidney
4
connective tissue
1
liver
Project
15
AMP
Genome assembly (visualization)
7
hg19
Lab
12
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
1
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
15 results
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single cell RNA-seq
ATAC-seq
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
kidney
5
liver
1
primary cell
pancreatic cell
2
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