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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
DNase-seq
75
ChIP-seq
Assay category
175
DNA accessibility
75
DNA binding
Target of assay
48
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
160
June, 2019
62
November, 2017
15
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2868
bigWig
2844
bam
1505
bed narrowPeak
1344
tsv
1005
fastq
885
bigBed narrowPeak
286
bed broadPeak
250
bigBed broadPeak
240
bed bed3+
234
tagAlign
19
bed bedMethyl
19
bedpe bed3+
19
bigBed bedMethyl
19
hic
12
bed bed3
7
bed bedgraph
4
txt
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
155
tissue
59
cell line
35
primary cell
1
in vitro differentiated cells
Organ
71
kidney
63
liver
36
limb
33
musculature of body
28
brain
27
heart
18
ureter
16
epithelium
16
vasculature
blood vessel
8
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
250
AMP
Genome assembly (visualization)
256
GRCh38
250
hg19
Lab
250
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
250 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 25 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
choroid plexus epithelial cell
1
2
cardiac fibroblast
2
astrocyte of the hippocampus
1
+ See 12 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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