Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
73
ChIP-seq
Assay category
185
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
170
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2921
bam
2741
bigWig
1554
bed narrowPeak
1377
tsv
1101
fastq
904
bigBed narrowPeak
385
tagAlign
295
bed broadPeak
258
bigBed broadPeak
247
bed bed3+
161
txt
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
258
Homo sapiens
Biosample type
171
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
epithelium
18
ureter
17
vasculature
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
258
AMP
Genome assembly (visualization)
242
GRCh38
241
hg19
Lab
258
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
epithelium
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
258 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download