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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
97
single cell RNA-seq
19
pCHi-C
16
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1037
Transcription
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
93
August, 2021
89
August, 2017
44
July, 2019
38
May, 2021
26
March, 2020
22
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1820
bam
1662
bigWig
1062
tsv
844
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1062
Homo sapiens
Biosample type
1062
tissue
268
primary cell
131
in vitro differentiated cells
67
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
275
pancreas
154
liver
111
heart
58
bone element
23
brain
blood vessel
14
vasculature
12
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1062
AMP
Genome assembly (visualization)
914
hg19
913
GRCh38
Lab
1061
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
1062 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
267
1
liver
147
1
1
bone tissue
58
heart left ventricle
3
18
1
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