Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
834
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
834
DNA binding
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
199
October, 2019
193
May, 2020
153
August, 2021
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
64
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
35
March, 2020
27
May, 2022
22
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1583
bam
1486
bigWig
1061
tsv
538
bed narrowPeak
336
fastq
320
bigBed narrowPeak
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2209
Homo sapiens
Biosample type
2217
tissue
774
primary cell
573
cell line
351
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2151
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1462
GRCh38
1405
hg19
Lab
2020
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
month_released!
August, 2022
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
2217 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
71
6
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
49
27
64
1
1
bone element
84
+ See 143 more…
See all biosamples
Download