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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
28
DNase-seq
9
total RNA-seq
3
Hi-C
3
pCHi-C
Assay category
102
Transcription
83
DNA binding
28
DNA accessibility
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
33
June, 2019
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
117
bam
104
tsv
102
bigWig
95
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
3
bedpe bed3+
3
hic
Organism
219
Homo sapiens
Biosample type
210
tissue
8
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
343
kidney
328
heart
268
brain
224
vasculature
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
219
AMP
Genome assembly (visualization)
102
hg19
101
GRCh38
Lab
219
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
blood vessel
month_released!
July, 2019
BIOSAMPLE
ASSAY
219 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
tissue
heart left ventricle
18
35
3
1
1
1
heart
1
14
18
2
1
heart right ventricle
17
13
1
1
1
1
right cardiac atrium
18
6
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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