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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
84
ATAC-seq
74
total RNA-seq
58
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
174
Transcription
90
DNA accessibility
58
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
32
histone
32
histone modification
19
broad histone mark
15
control
13
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
118
bed narrowPeak
117
tsv
64
bam
64
xls
61
bigWig
57
txt
38
tagAlign
17
fastq
6
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
2
bedpe bed3+
2
hic
1
vcf
Organism
335
Homo sapiens
Biosample type
246
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
16
brain
9
pancreas
8
embryo
blood vessel
6
connective tissue
6
epithelium
6
vasculature
2
adipose tissue
2
artery
1
spleen
Project
336
AMP
Genome assembly (visualization)
119
GRCh38
73
hg19
Lab
167
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
336 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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