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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
84
RNA microarray
14
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
ChIP-seq
pCHi-C
Assay category
499
Transcription
14
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
602
February, 2021
382
May, 2021
340
May, 2020
313
August, 2021
263
October, 2019
213
June, 2019
176
May, 2022
124
August, 2017
118
July, 2018
97
July, 2019
94
February, 2023
82
November, 2017
80
April, 2019
70
May, 2019
61
November, 2019
47
September, 2023
40
May, 2024
29
March, 2020
22
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
507
tsv
505
bam
495
bigWig
89
txt
fastq
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
tagAlign
Organism
602
Homo sapiens
Biosample type
545
tissue
29
cell line
26
in vitro differentiated cells
2
primary cell
Organ
454
connective tissue
386
adipose tissue
150
bone element
66
artery
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
2
liver
Project
602
AMP
Genome assembly (visualization)
508
hg19
504
GRCh38
Lab
602
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
organ_slims!
blood vessel
files.file_type!
fastq
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
602 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
ChIP-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
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