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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
499
total RNA-seq
84
RNA microarray
61
single cell RNA-seq
27
snATAC-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
560
Transcription
41
DNA accessibility
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
556
tsv
555
bam
544
bigWig
89
fastq
89
txt
11
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
698
Homo sapiens
Biosample type
551
tissue
91
primary cell
30
cell line
26
in vitro differentiated cells
Organ
457
connective tissue
386
adipose tissue
150
bone element
71
pancreas
66
artery
blood vessel
66
heart
66
vasculature
65
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
653
AMP
45
HPAP
Genome assembly (visualization)
559
hg19
553
GRCh38
Lab
653
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
698 results
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total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
6
kidney
5
+ See 14 more…
primary cell
Langerhans cell
12
27
pancreatic alpha cell
3
6
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
+ See 7 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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