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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
15
ChIP-seq
15
RRBS
12
ATAC-seq
10
WGBS
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
25
DNA methylation
15
DNA binding
14
DNA accessibility
6
3D chromatin structure
Target of assay
12
histone
12
histone modification
10
broad histone mark
6
control
2
narrow histone mark
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
89
bigWig
88
bam
60
tsv
22
bed bedMethyl
22
bigBed bedMethyl
17
bed narrowPeak
17
fastq
14
tagAlign
8
bigBed narrowPeak
4
bed broadPeak
2
bed bed3+
2
hdf5
Organism
120
Homo sapiens
Biosample type
93
tissue
27
primary cell
Organ
34
brain
25
heart
19
connective tissue
13
adipose tissue
13
epithelium
12
vasculature
blood vessel
11
kidney
11
pancreas
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
1
spleen
Project
120
AMP
Genome assembly (visualization)
95
hg19
85
GRCh38
Lab
119
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
blood vessel
month_released!
February, 2018
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
small RNA-seq
ChIP-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
brain
15
1
heart left ventricle
2
1
2
4
body of pancreas
2
2
4
omental fat pad
4
1
1
right lobe of liver
2
2
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 16 more…
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