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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
13
RRBS
10
WGBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
23
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
3
control
Date released
521
February, 2021
411
August, 2017
403
November, 2017
333
May, 2020
310
August, 2021
309
May, 2021
244
October, 2019
200
May, 2022
187
June, 2019
162
July, 2018
159
February, 2023
95
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
67
May, 2019
59
September, 2020
49
April, 2018
47
September, 2023
43
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
January, 2019
23
October, 2017
21
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
75
bigWig
73
bam
60
tsv
20
bed bedMethyl
20
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
95
Homo sapiens
Biosample type
70
tissue
25
primary cell
Organ
24
heart
18
brain
17
connective tissue
12
adipose tissue
12
epithelium
12
vasculature
blood vessel
10
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
95
AMP
Genome assembly (visualization)
80
hg19
71
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
blood vessel
month_released!
January, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 15 more…
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