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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
15
RRBS
11
ATAC-seq
10
WGBS
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
25
DNA methylation
13
DNA accessibility
6
3D chromatin structure
Target of assay
3
control
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
bigWig
73
bam
60
tsv
22
bed bedMethyl
22
bigBed bedMethyl
7
fastq
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
104
Homo sapiens
Biosample type
70
tissue
34
primary cell
Organ
25
heart
20
epithelium
18
brain
18
connective tissue
13
pancreas
12
adipose tissue
12
vasculature
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
97
AMP
7
HPAP
Genome assembly (visualization)
82
hg19
78
GRCh38
Lab
97
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
104 results
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total RNA-seq
small RNA-seq
RRBS
ATAC-seq
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
2
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
+ See 18 more…
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