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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
total RNA-seq
50
ChIP-seq
18
small RNA-seq
15
RRBS
10
WGBS
6
Hi-C
3
single cell RNA-seq
1
pCHi-C
Assay category
250
Transcription
DNA accessibility
50
DNA binding
25
DNA methylation
6
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
26
control
Date released
608
February, 2021
403
November, 2017
400
August, 2017
365
May, 2021
241
May, 2020
240
October, 2019
231
August, 2021
168
July, 2018
101
May, 2022
100
February, 2023
94
December, 2017
91
July, 2019
80
April, 2019
78
November, 2018
76
October, 2018
70
May, 2019
59
September, 2018
56
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
22
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
305
bam
284
bigWig
249
tsv
50
tagAlign
27
bed narrowPeak
22
bed bedMethyl
22
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
332
Homo sapiens
Biosample type
257
tissue
74
primary cell
1
cell line
Organ
204
liver
21
heart
18
connective tissue
16
brain
13
epithelium
12
adipose tissue
10
kidney
10
musculature of body
10
vasculature
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
287
AMP
45
T1D
Genome assembly (visualization)
292
hg19
274
GRCh38
Lab
287
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
332 results
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total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
pCHi-C
tissue
liver
145
50
1
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 21 more…
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 43 more…
cell line
HepG2
1
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