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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
15
RRBS
15
small RNA-seq
10
WGBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
48
Transcription
25
DNA methylation
6
3D chromatin structure
6
DNA accessibility
Target of assay
3
control
Date released
403
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
312
August, 2021
266
October, 2019
263
February, 2021
212
June, 2019
200
May, 2022
169
February, 2023
168
July, 2018
94
December, 2017
87
November, 2018
85
July, 2019
80
April, 2019
73
September, 2018
70
May, 2019
60
November, 2019
59
March, 2020
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
22
October, 2017
20
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
63
bigWig
61
bam
48
tsv
22
bed bedMethyl
22
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
85
Homo sapiens
Biosample type
60
tissue
25
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
adipose tissue
12
vasculature
blood vessel
11
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
85
AMP
Genome assembly (visualization)
70
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
blood vessel
adipose tissue
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
RRBS
small RNA-seq
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 20 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 15 more…
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