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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
1
Hi-C
Assay category
437
DNA binding
1
3D chromatin structure
Target of assay
271
transcription factor
87
histone
87
histone modification
74
control
66
recombinant protein
50
broad histone mark
38
RNA binding protein
37
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
423
bam
361
bigWig
356
fastq
341
bed narrowPeak
340
bigBed narrowPeak
78
tagAlign
68
bed broadPeak
62
bigBed broadPeak
3
tar
Organism
438
Homo sapiens
Biosample type
343
cell line
89
tissue
6
primary cell
Organ
316
liver
91
brain
27
blood
27
bodily fluid
7
spleen
6
epithelium
6
vasculature
blood vessel
Project
438
AMP
Genome assembly (visualization)
308
GRCh38
308
hg19
Lab
438
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
438 results
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Clear Filters
ChIP-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
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primary cell
astrocyte of the cerebellum
3
choroid plexus epithelial cell
3
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