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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
259
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
27
DNase-seq
16
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
259
DNA binding
227
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
221
histone
221
histone modification
113
broad histone mark
108
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
53
June, 2019
48
July, 2018
43
April, 2018
27
July, 2019
21
February, 2021
13
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
589
bigWig
582
bam
379
fastq
278
bed narrowPeak
268
tsv
132
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1000
Homo sapiens
Biosample type
2458
tissue
1000
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
bone element
1
bone marrow
1
pericardium
Project
528
AMP
276
HPAP
195
T1D
1
ITG
Genome assembly (visualization)
603
hg19
518
GRCh38
Lab
493
AMP-T2D consortium
276
Klaus Kaestner, Upenn
230
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
blood vessel
bone element
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
1000 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
33
4
2
1
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