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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
6
total RNA-seq
4
Hi-C
1
ATAC-seq
1
WGBS
Assay category
43
DNA binding
35
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
2
February, 2020
Available data
82
bam
70
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
89
Homo sapiens
Biosample type
89
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
blood vessel
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
69
GRCh38
69
hg19
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
blood vessel
bone element
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
tibial nerve
35
2
5
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
forelimb muscle
1
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