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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
109
ChIP-seq
2
ATAC-seq
Assay category
190
DNA accessibility
109
DNA binding
Target of assay
61
histone
61
histone modification
48
transcription factor
34
broad histone mark
27
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
176
June, 2019
68
November, 2017
39
August, 2017
8
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
Available data
2619
bam
2409
bigWig
1573
bed narrowPeak
1254
fastq
1054
tsv
935
bigBed narrowPeak
370
tagAlign
299
bed broadPeak
263
bigBed broadPeak
235
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
20
bedpe bed3+
20
hic
8
csv
6
bed bed3
3
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
293
Homo sapiens
Biosample type
205
tissue
59
cell line
35
primary cell
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
299
AMP
Genome assembly (visualization)
277
hg19
262
GRCh38
Lab
297
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
blood vessel
connective tissue
BIOSAMPLE
ASSAY
299 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 11 more…
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