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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
48
ChIP-seq
2
ATAC-seq
Assay category
199
DNA accessibility
48
DNA binding
Target of assay
histone
62
histone modification
48
transcription factor
34
broad histone mark
28
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
46
November, 2017
9
November, 2018
4
August, 2017
3
October, 2019
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2498
bam
2218
bigWig
1531
tsv
1127
fastq
903
bed narrowPeak
637
bigBed narrowPeak
247
bed broadPeak
245
bigBed broadPeak
237
bed bed3+
161
txt
153
zippedFastqFolder
71
tagAlign
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
247
Homo sapiens
Biosample type
173
tissue
45
cell line
28
primary cell
1
in vitro differentiated cells
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
blood vessel
9
connective tissue
9
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
247
AMP
Genome assembly (visualization)
232
GRCh38
224
hg19
Lab
245
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
organ_slims!
blood vessel
mammary gland
target.investigated_as!
histone
BIOSAMPLE
ASSAY
247 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
choroid plexus epithelial cell
1
1
glomerular visceral epithelial cell
2
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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