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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
28
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
31
DNA accessibility
28
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
31
June, 2019
22
July, 2019
15
April, 2019
7
March, 2020
5
May, 2019
5
May, 2024
3
May, 2021
3
October, 2019
2
February, 2020
1
February, 2023
Available data
113
tsv
76
bam
65
bigWig
43
bed narrowPeak
35
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
186
Homo sapiens
Biosample type
176
tissue
9
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
vasculature
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
186
AMP
Genome assembly (visualization)
65
GRCh38
56
hg19
Lab
181
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
organ_slims!
blood vessel
vasculature
target.investigated_as!
histone
BIOSAMPLE
ASSAY
186 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
11
3
3
4
2
1
1
1
heart
1
2
18
4
1
1
1
heart right ventricle
17
2
1
1
2
1
1
left cardiac atrium
18
5
1
right cardiac atrium
18
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
3
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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