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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
28
DNase-seq
8
WGBS
3
ATAC-seq
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
83
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
57
April, 2019
33
June, 2019
16
May, 2019
13
July, 2019
6
October, 2019
2
March, 2020
1
February, 2023
Available data
135
bam
120
bigWig
tsv
98
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
128
Homo sapiens
Biosample type
119
tissue
9
primary cell
Organ
617
liver
529
pancreas
368
epithelium
330
kidney
260
brain
206
connective tissue
185
heart
168
vasculature
blood vessel
115
limb
101
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
128
AMP
Genome assembly (visualization)
103
GRCh38
100
hg19
Lab
128
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
files.file_type!
tsv
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
3
4
2
1
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
right atrium auricular region
10
2
1
right cardiac atrium
6
1
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primary cell
cardiac fibroblast
5
3
1
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