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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
27
ChIP-seq
Assay category
197
DNA accessibility
27
DNA binding
Target of assay
transcription factor
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
8
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
182
June, 2019
16
November, 2017
13
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2735
bam
2496
bigWig
1532
tsv
1192
bed narrowPeak
902
fastq
562
bigBed narrowPeak
387
tagAlign
261
bed broadPeak
243
bed bed3+
224
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
224
Homo sapiens
Biosample type
171
tissue
37
primary cell
15
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
19
liver
18
ureter
15
vasculature
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
224
AMP
Genome assembly (visualization)
221
GRCh38
202
hg19
Lab
224
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
224 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
skeletal muscle myoblast
1
11
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
choroid plexus epithelial cell
1
1
glomerular visceral epithelial cell
2
+ See 15 more…
cell line
HepG2
14
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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