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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
1
Hi-C
Assay category
DNA accessibility
79
DNA binding
1
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
2
October, 2019
1
March, 2019
Available data
2943
bam
2765
bigWig
1586
tsv
1271
bed narrowPeak
1196
fastq
747
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
80
Homo sapiens
Biosample type
58
cell line
21
primary cell
1
tissue
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
pancreas
Project
80
AMP
Genome assembly (visualization)
80
hg19
62
GRCh38
Lab
79
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
bodily fluid
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
Hi-C
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
tissue
islet of Langerhans
1
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