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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
615
ChIP-seq
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
615
DNA binding
47
DNA accessibility
16
DNA methylation
Target of assay
522
histone modification
521
histone
268
narrow histone mark
253
broad histone mark
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
177
August, 2017
170
May, 2020
156
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
63
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
38
May, 2021
36
December, 2017
20
May, 2022
19
November, 2019
14
November, 2018
14
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
January, 2018
Available data
1730
bam
1595
bigWig
1076
tsv
807
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1589
Homo sapiens
Biosample type
1595
tissue
584
primary cell
465
cell line
258
in vitro differentiated cells
3
stem cell
Organ
479
connective tissue
421
adipose tissue
366
pancreas
262
liver
175
brain
130
heart
65
blood vessel
65
vasculature
58
bone element
55
limb
29
nerve
25
musculature of body
23
artery
23
kidney
15
spleen
1
pituitary gland
Project
1593
AMP
2
T1D
Genome assembly (visualization)
1535
GRCh38
1486
hg19
Lab
1534
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
bodily fluid
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
1595 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
2
islet of Langerhans
260
29
3
6
1
liver
147
82
20
1
bone tissue
58
left cardiac atrium
40
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