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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1771
ChIP-seq
1533
total RNA-seq
530
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
76
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA accessibility
75
DNA methylation
Date released
63
May, 2022
33
February, 2021
12
July, 2019
10
April, 2020
9
August, 2017
8
January, 2021
7
November, 2018
6
August, 2021
2
February, 2023
1
August, 2022
Available data
62
zippedFastqFolder
44
fastq
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
6
tsv
1
bed bed3+
1
txt
Organism
150
Homo sapiens
Biosample type
95
primary cell
55
tissue
1
cell line
Organ
62
pancreas
47
epithelium
10
lung
8
blood
bodily fluid
8
heart
6
adipose tissue
6
connective tissue
6
kidney
5
liver
2
blood vessel
2
musculature of body
2
spleen
2
vasculature
1
limb
Project
95
HPAP
36
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
17
GRCh38
1
hg19
Lab
95
Klaus Kaestner, Upenn
30
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
151 results
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snATAC-seq
WGBS
primary cell
Langerhans cell
48
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
2
heart left ventricle
4
+ See 12 more…
cell line
HepG2
1
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