Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
23
DNase-seq
13
single cell RNA-seq
1
MPRA
Assay category
72
Transcription
23
DNA accessibility
Date released
89
February, 2021
57
August, 2021
23
June, 2019
6
May, 2022
4
February, 2023
1
October, 2022
Available data
388
bam
344
fastq
219
bed narrowPeak
198
tsv
160
tagAlign
157
txt
153
bigWig
153
zippedFastqFolder
79
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
8
csv
2
bedpe bed3+
1
hic
1
vcf
Organism
179
Homo sapiens
Biosample type
172
tissue
7
primary cell
1
cell line
Organ
88
bone element
69
kidney
10
brain
8
pancreas
6
epithelium
4
skeleton
3
heart
1
blood vessel
1
connective tissue
1
vasculature
Project
180
AMP
Genome assembly (visualization)
258
GRCh38
hg19
Lab
117
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
5
audit script error
organ_slims!
bodily fluid
assembly!
hg19
BIOSAMPLE
ASSAY
180 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
DNase-seq
single cell RNA-seq
MPRA
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
body of pancreas
2
heart
2
+ See 16 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
cell line
MIN6
1
See all biosamples
Download