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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
72
total RNA-seq
55
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
94
DNA accessibility
72
Transcription
55
DNA binding
51
DNA methylation
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
86
May, 2022
56
February, 2023
29
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
6
February, 2021
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
54
bam
16
bigWig
8
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
282
Homo sapiens
Biosample type
161
primary cell
90
tissue
32
cell line
1
in vitro differentiated cells
Organ
284
pancreas
210
epithelium
149
liver
122
brain
113
heart
96
kidney
94
connective tissue
89
bone element
65
blood vessel
65
vasculature
64
adipose tissue
46
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
107
AMP
28
T1D
Genome assembly (visualization)
hg19
635
GRCh38
Lab
149
Klaus Kaestner, Upenn
90
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
24
inconsistent ontology term
1
audit script error
organ_slims!
bodily fluid
assembly!
hg19
month_released!
August, 2021
BIOSAMPLE
ASSAY
284 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
31
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
16
17
19
7
4
body of pancreas
1
9
2
2
pancreas
1
3
2
4
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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