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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
9
DNase-seq
4
ATAC-seq
Assay category
15
DNA binding
13
DNA accessibility
Target of assay
9
histone
9
histone modification
6
RNA binding protein
6
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
15
June, 2019
5
October, 2018
3
August, 2017
3
October, 2019
1
November, 2018
1
November, 2020
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
28
Homo sapiens
Biosample type
15
primary cell
10
tissue
3
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
28
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
organ_slims!
bodily fluid
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
tissue
omental fat pad
3
2
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
adipocyte
1
2
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